| Round 6 | ||||
| Date/Time | Number | Team | Traded From | Selection |
| 2/5/06 11:00 AM | 1 | Sluggers | Randy Flores | |
| 2/5/06 11:30 AM | 2 | Bandits | Chris Denorfia | |
| 2/5/06 12:00 PM | 3 | Phobics | Dana Eveland | |
| 2/5/06 12:30 PM | 4 | Hysteria | Wes Helms | |
| 2/5/06 1:00 PM | 5 | Irish | Phil Nevin | |
| 2/5/06 1:30 PM | 6 | Boulders | Shaun Marcum | |
| 2/5/06 2:00 PM | 7 | Drillers | Tony Giarratano | |
| 2/5/06 2:30 PM | 8 | HiSox | Robert Fick | |
| 2/5/06 3:00 PM | 9 | Commuters | Abraham Nunez | |
| 2/5/06 3:30 PM | 10 | Kangaroos | Todd Williams | |
| 2/5/06 4:00 PM | 11 | Blues | David Weathers | |
| 2/5/06 4:30 PM | 12 | Beasts | Jose Molina | |
| 2/5/06 5:00 PM | 13 | Scorpions | Nelson Cruz | |
| 2/6/06 8:00 AM | 14 | Peanuts | Bryan Bullington | |
| 2/6/06 8:30 AM | 15 | Anarchists | Elizardo Ramirez | |
| 2/6/06 9:00 AM | 16 | Skeeters | Damian Jackson | |
| 2/6/06 9:30 AM | 17 | Buffalo Chips | Danny Ardoin | |
| 2/6/06 10:00 AM | 18 | Vipers | Jesse Foppert | |
| 2/6/06 10:30 AM | 19 | Force | Blaine Boyer | |
| 2/6/06 11:00 AM | 20 | Hegelians | Sun Woo Kim | |
| 2/6/06 11:30 AM | 21 | Hens | Matt Guerrier | |
| 2/6/06 12:00 PM | 22 | Synthesis | Pinnipeds | Jeff Fiorentino |
| 2/6/06 12:30 PM | 23 | Sidewinders | Eric Milton | |
| 2/6/06 1:00 PM | 24 | Vipers | Synthesis | Octavio Dotel |